Process substitution <(…) creates a pipe, uses /dev/fd to give a path that's equivalent to the file descriptor where the pipe is, and passes the file name as an argument to the program. Here the program is sudo, and it passes that argument (which is just a string, as far as it's concerned) to wpa_supplicant, which treats it as a file name.
The problem is that sudo closes all file descriptors except for the standard ones (stdin=0, stdout=1 and stderr=2). The pipe of the process substitution is on another descriptor, which gets closed, so when wpa_supplicant tries to open it, it finds a file that doesn't exist.
If your sudo policy allows it (closefrom_override option enabled), you can tell it not to close file descriptors. But this is usually not the case.
sudo -C 64 wpa_supplicant … -c <(wpa_passphrase …)
Alternatively, since you aren't using standard input, pass the data there.
wpa_passphrase … | sudo wpa_supplicant … -c /dev/stdin
Alternatively, run a shell from sudo and put the process substitution there. Take care with quoting if the command contains special characters.
sudo bash -c 'wpa_supplication … -c <(wpa_passphrase …)'