Let's define $X_t=\sqrt{\nu_t}$. By using the Ito's lemma, it's easy to prove that
$$\cases{dX_t=\left(\left(\frac{\kappa\theta }{2}-\frac{\sigma^2 }{2} \right)\frac{1}{X_t}-\frac{\kappa}{8}X_t \right)dt + \frac{\sigma}{2}dW_t \tag{1}\\
X_0 = \sqrt{\nu_0}
}$$
Define $X_{\epsilon,t}=\sqrt{\mu_t}$, we have also
$$\cases{dX_{\epsilon,t}=\left(\left(\frac{\kappa\theta }{2}-\frac{\sigma^2 }{8} \right)\frac{1}{X_{\epsilon,t}}-\frac{\kappa}{2}X_{\epsilon,t} \right)dt + \frac{\sigma}{2}dW_t\tag{2}\\
X_{\epsilon,0} = \sqrt{\nu_0+\epsilon}
}$$
Define $Z_{t} = X_{\epsilon,t}-X_t$, take $(1)-(2)$, we deduce
$$dZ_t=d(X_{\epsilon,t}-X_t)=-\left(\left(\frac{\kappa\theta }{2}-\frac{\sigma^2 }{8} \right)\frac{1}{X_t\cdot X_{\epsilon,t}}+\frac{\kappa}{2} \right)Z_tdt $$
We remind that the CIR process has unique solution. So, for $\epsilon \ne 0$, the sign of $Z_t$ must remain unchanged over the domain $[0,T]$ (if not, suppose there exists a time $t_0 \in (0,T]$ such that $X_{\epsilon,t_0}=X_{t_0} \iff \nu_{t_0}=\mu_{t_0}$ then $\nu_t = \mu_t$ for all $t \in [0,T]$, in particular, $\nu_0 = \mu_0$: contradiction).
Then, WOLG, let's suppose that $Z_t>0$, we compute $d(\ln(Z_t))$ by using Ito's lemma, we have:
$$\begin{align}
d(\ln(Z_t))&=\frac{1}{Z_t}dZ_t +\frac{1}{2} \left( -\frac{1}{Z_t^2} \right)d[Z]_t\\
&=-\left(\left(\frac{\kappa\theta }{2}-\frac{\sigma^2 }{8} \right)\frac{1}{X_t\cdot X_{\epsilon,t}}+\frac{\kappa}{2} \right)dt \le -\frac{\kappa}{2} dt \tag{3}
\end{align}$$
because $X_t$ and $X_{\epsilon,t}$ are positive and by the Feller condition we have $\left(\frac{\kappa\theta }{2}-\frac{\sigma^2 }{8} \right) >0$
From $(3)$, we deduce that
$$\ln Z_t - \ln Z_0 \le -\frac{1}{2}\kappa t \iff \color{red}{Z_t \le (\sqrt{\nu_0+\epsilon} - \nu)\cdot e^{-\frac{1}{2}\kappa t}}\tag{4}$$
Return now to the main question, we have:
$$\begin{align}
\mathbb{E} \left(|\nu_t - \mu_t|^2 \right) &= \mathbb{E} \left(|\nu_t - \mu_t|^2 \right) \\
&=\mathbb{E} \left(\underbrace{|\sqrt{\nu_t} - \sqrt{\mu_t}|^2}_{=Z_t^2} |\sqrt{\nu_t} + \sqrt{\mu_t}|^2 \right) \\
&\le \sqrt{\mathbb{E} \left(Z_t^4\right) \cdot \mathbb{E}\left( |\sqrt{\nu_t} + \sqrt{\mu_t}|^4 \right) } \hspace{1cm} \text{by cauchy-schwarz inequality} \tag{5}
\end{align}$$
We have
$$\mathbb{E}\left( |\sqrt{\nu_t} + \sqrt{\mu_t}|^4 \right) \le \mathbb{E}\left( (2(\nu_t + \mu_t))^2 \right) \le 8 \mathbb{E}\left( \nu_t^2+\mu_t^2 \right)$$
and as the expectation and the variance of CIR process are bounded, there exists a known, bounded function $M_t <+\infty$ such that $\mathbb{E}\left( |\sqrt{\nu_t} + \sqrt{\mu_t}|^4 \right) \le M_t$
From $(4),(5)$ we have
$$\mathbb{E} \left(|\nu_t - \mu_t|^2 \right) \le \sqrt{M_t}\cdot \sqrt{e^{-2\kappa t}\cdot\left(\sqrt{\nu_0 + \epsilon}-\sqrt{\nu_0} \right)^4 } = \mathcal{O} (|\epsilon|)$$
We can conclude then
$$\color{red}{\sup_{t\in[0,T]}\mathbb{E} \left(|\nu_t - \mu_t|^2 \right) = \mathcal{O} (|\epsilon|)}$$