You mentioned before you are running
Here are some good settings to start with
innodb_buffer_pool_size=4G
innodb_buffer_pool_instance=2
innodb_read_io_threads=12
innodb_write_io_threads=12
innodb_io_capacity=300
innodb_log_file_size=128M
Don't do the conversion yet !!!
Put there settings in my.cnf, then do the following
service mysql stop
cd /var/lib/mysql
rm -f ibdata1 ib_logfile*
service mysql start
Now, you can do the conversion.
Give it a Try !!!
UPDATE 2013-05-10 10:44 EDT
Here are my past posts on tuning InnoDB for better CPU usage
Here are my past posts on tuning InnoDB
[mysqld] tmp_table_size=2G max_heap_table_size=2G innodb_data_file_path = ibdata1:10M:autoextend:max:512M
key_buffer_size = 256M max_allowed_packet = 1M table_open_cache = 256 sort_buffer_size = 1M read_buffer_size = 1M read_rnd_buffer_size = 4M myisam_sort_buffer_size = 64M thread_cache_size = 8 query_cache_size= 16M
[myisamchk] key_buffer_size = 128M sort_buffer_size = 128M read_buffer = 2M write_buffer = 2M
[mysqlhotcopy] interactive-timeout
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– Malus Jan Apr 15 '19 at 14:26