I had a Linux/OS X 10.11 dual boot configuration and wanted to remove the Linux partitions. I managed to remove them without any issue but when trying to merge the free space with the OS X partition something went wrong (I used the disk utility only), and after a reboot this is now shown when looking for the different partitions :
-bash-3.2# diskutil list
/dev/disk0 (internal, physical):
#: TYPE NAME SIZE IDENTIFIER
0: GUID_partition_scheme *251.0 GB disk0
1: EFI EFI 209.7 MB disk0s1
2: FFFFFFFF-FFFF-FFFF-FFFF-FFFFFFFFFFFF 170.4 GB disk0s2
3: Apple_HFS Recovery HD 649.1 MB disk0s4
/dev/disk1 (disk image):
#: TYPE NAME SIZE IDENTIFIER
0: GUID_partition_scheme +2.1 GB disk1
1: Apple_HFS OS X Base System 2.0 GB disk1s1
-bash-3.2# diskutil corestorage list
No CoreStorage logical volume groups found
I have found a similar issue but I am not familiar with OSX/BSD commands and I don't want damage anything : Diskutil can't find Core Storage Volumes
And i get roughly the same results :
-bash-3.2# fsck_cs /dev/disk0s2
Executing fsck_cs (version 517.20.1)
** Checking volume
** Content Hint for disk0s2 is not Apple_CoreStorage
** disk0s2: Scan for Volume Headers
** disk0s2: Scan for Disk Labels
** Logical Volume Group 1AE35784-CFDF-445A-876D-23931CE9FB91 on 1 device
** disk0s2: Scan for Metadata Volume
** Logical Volume Group has a 24 MB Metadata Volume with double redundancy
Start scanning metadata for a valid checkpoint
** Load and verify Segment Headers
** Load and verify Checkpoint Payload
** Load and verify Transaction Segment
** Incorporate 0 newer non-checkpoint transactions
** Load and verify Virtual Address Table
** Load and verify Segment Usage Table
** Load and verify Metadata Superblock
** Load and verify Logical Volumes B-Trees
** Logical Volume Group contains 1 Logical Volume
** Load and verify 37BE577C-5FBD-4919-9864-C8501FD8E965
** Load and verify 9DE1F86F-7BFC-420F-B751-55D20B107137
** Load and verify Freespace Summary
** Load and verify Block Accounting
** Load and verify Live Virtual Addresses
** Newest transaction commit checkpoint is valid
** Load and verify Segment Cleaning
** The volume 1AE35784-CFDF-445A-876D-23931CE9FB91 appears to be OK
Could you please guide me through the steps described in the link above ? I am afraid of doing something wrong with the gpt and fdisk commands (I have read their BSD manuals but can't allow myself to lose the data on that disk).
Thank you in advance !
Progress
I tried to follow klanomath's (thanks a lot for answering so quickly) instructions but gpt gave me an error, here's exactly what i did :
-bash-3.2# gpt -r show /dev/disk0
gpt show: /dev/disk0: Suspicious MBR at sector 0
start size index contents
0 1 MBR
1 1 Pri GPT header
2 32 Pri GPT table
34 6
40 409600 1 GPT part - C12A7328-F81F-11D2-BA4B-00A0C93EC93B
409640 332728384 2 GPT part - FFFFFFFF-FFFF-FFFF-FFFF-FFFFFFFFFFFF
333138024 155828120
488966144 1267712 4 GPT part - 48465300-0000-11AA-AA11-00306543ECAC
490233856 863
490234719 32 Sec GPT table
490234751 1 Sec GPT header
-bash-3.2# diskutil unmountDisk /dev/disk0
Unmount of all volumes on disk0 was successful
-bash-3.2# gpt remove -i 2 /dev/disk0
gpt remove: /dev/disk0: Suspicious MBR at sector 0
/dev/disk0s2 removed
-bash-3.2# diskutil unmountDisk /dev/disk0
Unmount of all volumes on disk0 was successful
-bash-3.2# gpt add -i 2 -b 409640 -s 332728384 -t 53746F72-6167-11AA-AA11-00306543ECAC /dev/disk0
gpt add: /dev/disk0: Suspicious MBR at sector 0
gpt add: /dev/disk0: error: no space available on device
And now I get this :
-bash-3.2# gpt -r show /dev/disk0
gpt show: /dev/disk0: Suspicious MBR at sector 0
start size index contents
0 1 MBR
1 409639
409640 332728384 2 MBR part 218
333138024 155828120
488966144 1267712 4 MBR part 175
490233856 896
-bash-3.2# diskutil list
/dev/disk0
#: TYPE NAME SIZE IDENTIFIER
0: FDisk_partition_scheme *251.0 GB disk0
1: 0xEE 209.7 MB disk0s1
2: 0xDA 170.4 GB disk0s2
3: Apple_HFS Recovery HD 649.1 MB disk0s4
I hope i didn't break anything... I have found another stackexchange question which seems to be quite similar : How to fix broken GPT, GUID and unmountable, no type volumes?
But I am afraid of breaking things down even more if trying that alone, and I don't understand in which order I should follow the different steps (removing MBR/damaged partitions/GUID recovery). I would highly appreciate any help on that again, thanks in advance !
Solution
Following the steps as described by klanomath I managed to recover that partition and save the files elsewhere. Note that I couldn't repair the disk after a verification through the disk utility, my guess is that the old version of the disk utility in the Internet recovery is not capable of doing that for something created with a recent version but I'm not sure about that.
Anyway, I got my data back, thanks a lot for your help klanomath !
The free space is the linux system I removed.
sudo gpt -r show /dev/disk0to your question I may add a proper size* in my answer below. – klanomath Jun 03 '16 at 12:15