Partial answer:
(1) To see if a NIB image would do the job, try to copy the floppy with one the Apple II nibble copy programs (Locksmith etc) to another floppy. If that works, a nibble image will likely work.
(2) After a quick look, it seems like Apple2-IO-RPi doesn't support full drive emulation, so unfortunately you can't just nibble copy to it as a destination drive.
(3) The usual way to create a nibble image is to use something to connect an Apple II Floppy drive to external hardware, and use that to make the nibble image.
(4) In your situation, if you don't have any way to attach the drive to external hardware, I'd probably write some custom Apple II code that reads all the nibbles in a track, and then uses the Apple2-IO-RPI block commands to write it out. No idea if someone already made something like this, and you need 6502 assembly skills and understanding of the Apple II Floppy hardware to write it.